Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record KN817520.1:
Cluster 1Ubia_cyclase553109594170
The following clusters are from record KN817523.1:
Cluster 2Other4638090400
The following clusters are from record KN817524.1:
Cluster 3Nrps202840250845
The following clusters are from record KN817528.1:
Cluster 4Terpene6256083754
Cluster 5Siderophore215904231758
Cluster 6Terpene468454489709
The following clusters are from record KN817529.1:
Cluster 7T1pks113054172240
The following clusters are from record KN817545.1:
Cluster 8Terpene297226318398
The following clusters are from record KN817546.1:
Cluster 9T1fas210888252658
Cluster 10T1fas264686308348
The following clusters are from record KN817547.1:
Cluster 11Terpene209303231257
Cluster 12Terpene282823318539
Cluster 13Ubia_cyclase343941382265
The following clusters are from record KN817555.1:
Cluster 14Terpene143716165202
Cluster 15Other195669253083
The following clusters are from record KN817560.1:
Cluster 16Terpene122329143552
The following clusters are from record KN817570.1:
Cluster 17T1pks197665244334
The following clusters are from record KN817577.1:
Cluster 18T1fas186876239822
The following clusters are from record KN817580.1:
Cluster 19Other183486227444
The following clusters are from record KN817616.1:
Cluster 20Terpene1604337702
The following clusters are from record KN817617.1:
Cluster 21Other59735104279
The following clusters are from record KN817630.1:
Cluster 22Terpene75925117842
The following clusters are from record KN817633.1:
Cluster 23T1pks3379295564
The following clusters are from record KN817680.1:
Cluster 24T1fas4169465732
The following clusters are from record KN817693.1:
Cluster 25T1fas124039
The following clusters are from record KN817722.1:
Cluster 26Terpene1281340687

Cluster 1 - Ubia_cyclase

Gene cluster description

Gene Cluster 1. Type = UbiA_cyclase. Location: 553109 - 594170 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 2 - Other

Gene cluster description

Gene Cluster 2. Type = other. Location: 46380 - 90400 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 3 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
HYPSUDRAFT_63026
NRPSPredictor2 SVM: N/A
Stachelhaus code: lys
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 3. Type = nrps. Location: 202840 - 250845 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 4 - Terpene

Gene cluster description

Gene Cluster 4. Type = terpene. Location: 62560 - 83754 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 5 - Siderophore

Gene cluster description

Gene Cluster 5. Type = siderophore. Location: 215904 - 231758 nt. Click on genes for more information.
Show pHMM detection rules used
siderophore: (IucA_IucC)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 6 - Terpene

Gene cluster description

Gene Cluster 6. Type = terpene. Location: 468454 - 489709 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 7 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mmal) + (nrp)
HYPSUDRAFT_52722
NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: leu
Minowa: pip
consensus: nrp

HYPSUDRAFT_213469
PKS signature: mmal
Minowa: mmal
consensus: mmal

Gene cluster description

Gene Cluster 7. Type = t1pks. Location: 113054 - 172240 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 8 - Terpene

Gene cluster description

Gene Cluster 8. Type = terpene. Location: 297226 - 318398 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 9 - T1fas

Gene cluster description

Gene Cluster 9. Type = t1fas. Location: 210888 - 252658 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 10 - T1fas

Gene cluster description

Gene Cluster 10. Type = t1fas. Location: 264686 - 308348 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 11 - Terpene

Gene cluster description

Gene Cluster 11. Type = terpene. Location: 209303 - 231257 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 12 - Terpene

Gene cluster description

Gene Cluster 12. Type = terpene. Location: 282823 - 318539 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 13 - Ubia_cyclase

Gene cluster description

Gene Cluster 13. Type = UbiA_cyclase. Location: 343941 - 382265 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 14 - Terpene

Gene cluster description

Gene Cluster 14. Type = terpene. Location: 143716 - 165202 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 15 - Other

Gene cluster description

Gene Cluster 15. Type = other. Location: 195669 - 253083 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 16 - Terpene

Gene cluster description

Gene Cluster 16. Type = terpene. Location: 122329 - 143552 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 17 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
HYPSUDRAFT_142679
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 17. Type = t1pks. Location: 197665 - 244334 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 18 - T1fas

Gene cluster description

Gene Cluster 18. Type = t1fas. Location: 186876 - 239822 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 19 - Other

Gene cluster description

Gene Cluster 19. Type = other. Location: 183486 - 227444 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 20 - Terpene

Gene cluster description

Gene Cluster 20. Type = terpene. Location: 16043 - 37702 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 21 - Other

Gene cluster description

Gene Cluster 21. Type = other. Location: 59735 - 104279 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 22 - Terpene

Gene cluster description

Gene Cluster 22. Type = terpene. Location: 75925 - 117842 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 23 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-pk) + (nrp-mal)
HYPSUDRAFT_71798
NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: tcl
Minowa: leu
consensus: nrp

PKS signature: mal
Minowa: mal
consensus: mal

HYPSUDRAFT_48017
NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: N/A
Minowa: glu
consensus: nrp

PKS signature: mal
Minowa: mxmal
consensus: pk

Gene cluster description

Gene Cluster 23. Type = t1pks. Location: 33792 - 95564 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 24 - T1fas

Gene cluster description

Gene Cluster 24. Type = t1fas. Location: 41694 - 65732 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

No significant ClusterBlast hits found.

Cluster 25 - T1fas

Gene cluster description

Gene Cluster 25. Type = t1fas. Location: 1 - 24039 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 26 - Terpene

Gene cluster description

Gene Cluster 26. Type = terpene. Location: 12813 - 40687 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters