Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record JPKB01000002.1:
Cluster 1T1pks83110121059
The following clusters are from record JPKB01000031.1:
Cluster 2T1pks1711081544
The following clusters are from record JPKB01000101.1:
Cluster 3Nrps-t1pks116464167447
The following clusters are from record JPKB01000102.1:
Cluster 4Nrps-t1pks605358419
The following clusters are from record JPKB01000103.1:
Cluster 5T1pks74527115524
The following clusters are from record JPKB01000137.1:
Cluster 6Nrps4329997760
The following clusters are from record JPKB01000146.1:
Cluster 7Nrps316253433
The following clusters are from record JPKB01000234.1:
Cluster 8T1fas115394
The following clusters are from record JPKB01000312.1:
Cluster 9Nrps139377
The following clusters are from record JPKB01000399.1:
Cluster 10T3pks132431
Cluster 11T1pks85873132496
Cluster 12Ubia_cyclase122931153348
The following clusters are from record JPKB01000524.1:
Cluster 13T1pks1716163847
The following clusters are from record JPKB01000540.1:
Cluster 14T1pks-nrps757969230
The following clusters are from record JPKB01000583.1:
Cluster 15Terpene4453765929
The following clusters are from record JPKB01000591.1:
Cluster 16Nrps114987
The following clusters are from record JPKB01000765.1:
Cluster 17T1pks545452812
The following clusters are from record JPKB01000846.1:
Cluster 18Other126370
The following clusters are from record JPKB01000852.1:
Cluster 19T1pks134848
The following clusters are from record JPKB01001000.1:
Cluster 20T1pks525950768
The following clusters are from record JPKB01001005.1:
Cluster 21Terpene114327
The following clusters are from record JPKB01001107.1:
Cluster 22Other124107
The following clusters are from record JPKB01001132.1:
Cluster 23T1pks66936114601
The following clusters are from record JPKB01001209.1:
Cluster 24Other839552342
The following clusters are from record JPKB01001251.1:
Cluster 25Other4291586967
The following clusters are from record JPKB01001254.1:
Cluster 26T2fas129520
The following clusters are from record JPKB01001319.1:
Cluster 27T1pks140862
The following clusters are from record JPKB01001340.1:
Cluster 28Nrps2016666519

Cluster 1 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
V499_00041
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 1. Type = t1pks. Location: 83110 - 121059 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 2 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk) + (mal)
V499_00270
PKS signature: mal
Minowa: mal
consensus: mal

V499_00278
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 2. Type = t1pks. Location: 17110 - 81544 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 3 - Nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp) + (pk-nrp)
V499_00955
NRPSPredictor2 SVM: phe,trp
Stachelhaus code: tyr
Minowa: arg
consensus: nrp

V499_00962
PKS signature: mal
Minowa: mmal
consensus: pk

NRPSPredictor2 SVM: asp,asn,glu,gln,aad
Stachelhaus code: lys
Minowa: glu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 3. Type = nrps-t1pks. Location: 116464 - 167447 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 4 - Nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp) + (pk-nrp)
V499_00971
NRPSPredictor2 SVM: phe,trp,phg,tyr,bht
Stachelhaus code: asn
Minowa: ala
consensus: nrp

V499_00977
PKS signature: mal
Minowa: mmal
consensus: pk

NRPSPredictor2 SVM: orn,lys,arg
Stachelhaus code: orn
Minowa: cys
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 4. Type = nrps-t1pks. Location: 6053 - 58419 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 5 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mmal)
V499_01010
PKS signature: mmal
Minowa: mmal
consensus: mmal

Gene cluster description

Gene Cluster 5. Type = t1pks. Location: 74527 - 115524 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 6 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp-nrp) + (nrp)
V499_01170
NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: N/A
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: hpg
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: cha
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: orn
Minowa: ala
consensus: nrp

V499_01176
NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: gly
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 6. Type = nrps. Location: 43299 - 97760 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 7 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp)
V499_01225
NRPSPredictor2 SVM: orn,lys,arg
Stachelhaus code: gly
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: arg
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 7. Type = nrps. Location: 3162 - 53433 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 8 - T1fas

Gene cluster description

Gene Cluster 8. Type = t1fas. Location: 1 - 15394 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 9 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-val)
V499_02159
NRPSPredictor2 SVM: asp,asn,glu,gln,aad
Stachelhaus code: N/A
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: val
Minowa: val
consensus: val

Database cross-links

Gene cluster description

Gene Cluster 9. Type = nrps. Location: 1 - 39377 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 10 - T3pks

Gene cluster description

Gene Cluster 10. Type = t3pks. Location: 1 - 32431 nt. Click on genes for more information.
Show pHMM detection rules used
t3pks: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 11 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
V499_02618
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 11. Type = t1pks. Location: 85873 - 132496 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 12 - Ubia_cyclase

Gene cluster description

Gene Cluster 12. Type = UbiA_cyclase. Location: 122931 - 153348 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 13 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
V499_03377
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 13. Type = t1pks. Location: 17161 - 63847 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 14 - T1pks-nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk-nrp) + (mal)
V499_03507
PKS signature: mal
Minowa: mal
consensus: mal

V499_03509
PKS signature: mal
Minowa: mmal
consensus: pk

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: val
Minowa: leu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 14. Type = t1pks-nrps. Location: 7579 - 69230 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 15 - Terpene

Gene cluster description

Gene Cluster 15. Type = terpene. Location: 44537 - 65929 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 16 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
V499_03977
NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: glu
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 16. Type = nrps. Location: 1 - 14987 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 17 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
V499_05002
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 17. Type = t1pks. Location: 5454 - 52812 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 18 - Other

Gene cluster description

Gene Cluster 18. Type = other. Location: 1 - 26370 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 19 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
V499_05344
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 19. Type = t1pks. Location: 1 - 34848 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 20 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
V499_05998
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 20. Type = t1pks. Location: 5259 - 50768 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 21 - Terpene

Gene cluster description

Gene Cluster 21. Type = terpene. Location: 1 - 14327 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 22 - Other

Gene cluster description

Gene Cluster 22. Type = other. Location: 1 - 24107 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 23 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
V499_06779
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 23. Type = t1pks. Location: 66936 - 114601 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 24 - Other

Gene cluster description

Gene Cluster 24. Type = other. Location: 8395 - 52342 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 25 - Other

Gene cluster description

Gene Cluster 25. Type = other. Location: 42915 - 86967 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 26 - T2fas

Gene cluster description

Gene Cluster 26. Type = t2fas. Location: 1 - 29520 nt. Click on genes for more information.
Show pHMM detection rules used
t2fas: (t2fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 27 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
V499_08529
PKS signature: mal
Minowa: mxmal
consensus: pk

Gene cluster description

Gene Cluster 27. Type = t1pks. Location: 1 - 40862 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 28 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
V499_08802
NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: gly
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 28. Type = nrps. Location: 20166 - 66519 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters