Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record GL532079.1:
Cluster 1T1fas119805
The following clusters are from record GL532685.1:
Cluster 2T1pks118781
The following clusters are from record GL532890.1:
Cluster 3Other3138474653
The following clusters are from record GL532905.1:
Cluster 4T2fas1307752288
The following clusters are from record GL532951.1:
Cluster 5T1pks112226
The following clusters are from record GL533075.1:
Cluster 6T1pks130373
The following clusters are from record GL533333.1:
Cluster 7T1pks-nrps1180792617
The following clusters are from record GL533496.1:
Cluster 8Terpene114657
The following clusters are from record GL533586.1:
Cluster 9T3pks122607
The following clusters are from record GL533652.1:
Cluster 10Nrps-t1pks140631
The following clusters are from record GL533728.1:
Cluster 11Lantipeptide1030637728
The following clusters are from record GL533912.1:
Cluster 12Other129954
The following clusters are from record GL534008.1:
Cluster 13Terpene389433034
The following clusters are from record GL534020.1:
Cluster 14Other115534
The following clusters are from record GL534021.1:
Cluster 15Other869531562
The following clusters are from record GL534056.1:
Cluster 16T1pks112325
The following clusters are from record GL534083.1:
Cluster 17T1pks-nrps788369680
The following clusters are from record GL534142.1:
Cluster 18Terpene3855161342
The following clusters are from record GL534189.1:
Cluster 19T1pks130735
The following clusters are from record GL534374.1:
Cluster 20T1pks129447
The following clusters are from record GL534420.1:
Cluster 21Nrps-t1fas49401118466
The following clusters are from record GL534459.1:
Cluster 22Nrps161977
The following clusters are from record GL534744.1:
Cluster 23Nrps1771744735
The following clusters are from record GL534768.1:
Cluster 24T1pks756355823
The following clusters are from record GL534849.1:
Cluster 25T1pks128184
The following clusters are from record GL535307.1:
Cluster 26Terpene1086025707
The following clusters are from record GL535321.1:
Cluster 27Nrps2894565791
The following clusters are from record GL535354.1:
Cluster 28Nrps130456
The following clusters are from record GL535377.1:
Cluster 29Nrps133202
The following clusters are from record GL535380.1:
Cluster 30Nrps-t1pks140342
The following clusters are from record GL535578.1:
Cluster 31T1pks132957
The following clusters are from record GL535588.1:
Cluster 32Other3238076232
The following clusters are from record GL535751.1:
Cluster 33Terpene19418856
The following clusters are from record GL536293.1:
Cluster 34Terpene3704349869
The following clusters are from record GL536308.1:
Cluster 35T1pks128483
The following clusters are from record GL536435.1:
Cluster 36Nrps-t1pks125057
The following clusters are from record GL536976.1:
Cluster 37T1pks-nrps124983
The following clusters are from record GL537083.1:
Cluster 38T1pks138651
The following clusters are from record GL537327.1:
Cluster 39T1fas-nrps147006
The following clusters are from record GL537410.1:
Cluster 40T1pks130677
The following clusters are from record GL538034.1:
Cluster 41T1pks131247
The following clusters are from record GL538082.1:
Cluster 42T1pks122048

Cluster 1 - T1fas

Gene cluster description

Gene Cluster 1. Type = t1fas. Location: 1 - 19805 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 2 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
PTT_06073
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 2. Type = t1pks. Location: 1 - 18781 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 3 - Other

Gene cluster description

Gene Cluster 3. Type = other. Location: 31384 - 74653 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 4 - T2fas

Gene cluster description

Gene Cluster 4. Type = t2fas. Location: 13077 - 52288 nt. Click on genes for more information.
Show pHMM detection rules used
t2fas: (t2fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 5 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_07049
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 5. Type = t1pks. Location: 1 - 12226 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 6 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:

Gene cluster description

Gene Cluster 6. Type = t1pks. Location: 1 - 30373 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 7 - T1pks-nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp) + (nrp) + (pk)
PTT_07891
PKS signature: mal
Minowa: mxmal
consensus: pk

PTT_07899
NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: N/A
Minowa: aeo
consensus: nrp

PTT_07901
NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: pro
Minowa: his
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 7. Type = t1pks-nrps. Location: 11807 - 92617 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 8 - Terpene

Gene cluster description

Gene Cluster 8. Type = terpene. Location: 1 - 14657 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 9 - T3pks

Gene cluster description

Gene Cluster 9. Type = t3pks. Location: 1 - 22607 nt. Click on genes for more information.
Show pHMM detection rules used
t3pks: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 10 - Nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-ala-nrp-nrp-ala-nrp-nrp) + (pk)
PTT_08794
NRPSPredictor2 SVM: N/A
Stachelhaus code: lys
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: ala
Stachelhaus code: N/A
Minowa: ala
consensus: ala

NRPSPredictor2 SVM: N/A
Stachelhaus code: tyr
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: gln
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: ala
Minowa: ala
consensus: ala

NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: phe
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: pro
Minowa: ala
consensus: nrp

PTT_08797
PKS signature: mal
Minowa: mmal
consensus: pk

Database cross-links

Gene cluster description

Gene Cluster 10. Type = nrps-t1pks. Location: 1 - 40631 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 11 - Lantipeptide

Gene cluster description

Gene Cluster 11. Type = lantipeptide. Location: 10306 - 37728 nt. Click on genes for more information.
Show pHMM detection rules used
lantipeptide: ((Lant_dehyd_N & Lant_dehyd_C) or cluster(LANC_like,Flavoprotein) or cluster(LANC_like,Trp_halogenase) or cluster(LANC_like,p450) or (LANC_like & Pkinase) or (LANC_like & DUF4135) or cluster(LANC_like,Lant_dehyd_N) or cluster(LANC_like,Lant_dehyd_C) or cluster(LANC_like,adh_short) or cluster(LANC_like,adh_short_C2) or TIGR03731 or Antimicr18 or Gallidermin or L_biotic_A or TIGR03731 or leader_d or leader_eh or leader_abc or mature_d or mature_ab or mature_a or mature_b or mature_ha or mature_h_beta or lacticin_l or lacticin_mat or LD_lanti_pre or strep_PEQAXS)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

No core peptides found.

Homologous gene clusters

Cluster 12 - Other

Gene cluster description

Gene Cluster 12. Type = other. Location: 1 - 29954 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 13 - Terpene

Gene cluster description

Gene Cluster 13. Type = terpene. Location: 3894 - 33034 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 14 - Other

Gene cluster description

Gene Cluster 14. Type = other. Location: 1 - 15534 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 15 - Other

Gene cluster description

Gene Cluster 15. Type = other. Location: 8695 - 31562 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 16 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
PTT_09773
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 16. Type = t1pks. Location: 1 - 12325 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

No significant ClusterBlast hits found.

Cluster 17 - T1pks-nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk) + (nrp)
PTT_09821
PKS signature: mal
Minowa: mmal
consensus: pk

PTT_09827
NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: bht
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 17. Type = t1pks-nrps. Location: 7883 - 69680 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 18 - Terpene

Gene cluster description

Gene Cluster 18. Type = terpene. Location: 38551 - 61342 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 19 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_10097
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 19. Type = t1pks. Location: 1 - 30735 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 20 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk) + (mal)
PTT_10610
PKS signature: mal
Minowa: mal
consensus: mal

PTT_10611
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 20. Type = t1pks. Location: 1 - 29447 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 21 - Nrps-t1fas

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp-nrp-nrp) + (pk)
PTT_10812
NRPSPredictor2 SVM: N/A
Stachelhaus code: pro
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: ser
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: leu
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: val
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: trp
Minowa: ala
consensus: nrp

PTT_10815
PKS signature: N/A
Minowa: trans-1,2-CPDA
consensus: pk

Database cross-links

Gene cluster description

Gene Cluster 21. Type = nrps-t1fas. Location: 49401 - 118466 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 22 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp-ala)
PTT_10907
NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: orn
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: N/A
Stachelhaus code: leu
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: N/A
Stachelhaus code: tyr
Minowa: lys
consensus: nrp

NRPSPredictor2 SVM: val
Stachelhaus code: ala
Minowa: ala
consensus: ala

Database cross-links

Gene cluster description

Gene Cluster 22. Type = nrps. Location: 1 - 61977 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 23 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
PTT_11622
NRPSPredictor2 SVM: glu,gln
Stachelhaus code: lys
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 23. Type = nrps. Location: 17717 - 44735 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 24 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
PTT_11692
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 24. Type = t1pks. Location: 7563 - 55823 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 25 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_11916
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 25. Type = t1pks. Location: 1 - 28184 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 26 - Terpene

Gene cluster description

Gene Cluster 26. Type = terpene. Location: 10860 - 25707 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 27 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp-nrp)
PTT_13335
NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: bmt
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: ser
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: N/A
Stachelhaus code: arg
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: gly,ala
Stachelhaus code: trp
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 27. Type = nrps. Location: 28945 - 65791 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 28 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
PTT_13391
NRPSPredictor2 SVM: hydrophobic-aromatic
Stachelhaus code: gly
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 28. Type = nrps. Location: 1 - 30456 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 29 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp-nrp)
PTT_13461
NRPSPredictor2 SVM: N/A
Stachelhaus code: ala
Minowa: leu
consensus: nrp

NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
Stachelhaus code: pro
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: N/A
Stachelhaus code: trp
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: gly
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 29. Type = nrps. Location: 1 - 33202 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 30 - Nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal) + (nrp)
PTT_13470
NRPSPredictor2 SVM: N/A
Stachelhaus code: gly
Minowa: orn
consensus: nrp

PTT_13471
PKS signature: mal
Minowa: mal
consensus: mal

Database cross-links

Gene cluster description

Gene Cluster 30. Type = nrps-t1pks. Location: 1 - 40342 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 31 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_13870
PKS signature: N/A
Minowa: mal
consensus: pk

Gene cluster description

Gene Cluster 31. Type = t1pks. Location: 1 - 32957 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 32 - Other

Gene cluster description

Gene Cluster 32. Type = other. Location: 32380 - 76232 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 33 - Terpene

Gene cluster description

Gene Cluster 33. Type = terpene. Location: 194 - 18856 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 34 - Terpene

Gene cluster description

Gene Cluster 34. Type = terpene. Location: 37043 - 49869 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 35 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_15529
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 35. Type = t1pks. Location: 1 - 28483 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 36 - Nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk-nrp)
PTT_15813
PKS signature: mal
Minowa: mmal
consensus: pk

NRPSPredictor2 SVM: glu,gln
Stachelhaus code: hpg
Minowa: glu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 36. Type = nrps-t1pks. Location: 1 - 25057 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 37 - T1pks-nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp) + (pk)
PTT_16988
PKS signature: mal
Minowa: mxmal
consensus: pk

PTT_16992
NRPSPredictor2 SVM: hydrophobic-aliphatic
Stachelhaus code: N/A
Minowa: aeo
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 37. Type = t1pks-nrps. Location: 1 - 24983 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 38 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_17304
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 38. Type = t1pks. Location: 1 - 38651 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 39 - T1fas-nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pro-ala-ala-nrp)
PTT_18044
NRPSPredictor2 SVM: pro,pip
Stachelhaus code: pro
Minowa: pro
consensus: pro

NRPSPredictor2 SVM: ala
Stachelhaus code: ala
Minowa: ala
consensus: ala

NRPSPredictor2 SVM: ala
Stachelhaus code: ala
Minowa: ala
consensus: ala

NRPSPredictor2 SVM: ala
Stachelhaus code: N/A
Minowa: aeo
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 39. Type = t1fas-nrps. Location: 1 - 47006 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 40 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_18319
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 40. Type = t1pks. Location: 1 - 30677 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 41 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
PTT_20032
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Gene Cluster 41. Type = t1pks. Location: 1 - 31247 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 42 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
PTT_20106
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 42. Type = t1pks. Location: 1 - 22048 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters