Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record GL377302.1:
Cluster 1Ubia_cyclase426578467417
Cluster 2Nrps17325121791912
Cluster 3T1pks35720253618126
The following clusters are from record GL377303.1:
Cluster 4Ubia_cyclase323051364242
Cluster 5Other16475961693851
Cluster 6Nrps31607103219916
Cluster 7Terpene44219374447522
The following clusters are from record GL377304.1:
Cluster 8Terpene17273311748555
Cluster 9Ubia_cyclase17580211799025
The following clusters are from record GL377305.1:
Cluster 10Other27946642840439
Cluster 11Ubia_cyclase32141793254741
The following clusters are from record GL377306.1:
Cluster 12T1fas200979253860
Cluster 13Terpene338184359564
Cluster 14Terpene373738395134
Cluster 15Nrps21215792165578
Cluster 16Nrps21745532218554
The following clusters are from record GL377307.1:
Cluster 17Nrps19013321945352
The following clusters are from record GL377308.1:
Cluster 18Ubia_cyclase493901534873
Cluster 19Ubia_cyclase16590711701926
The following clusters are from record GL377310.1:
Cluster 20Other489907534359
The following clusters are from record GL377311.1:
Cluster 21Ubia_cyclase386387427015
The following clusters are from record GL377312.1:
Cluster 22Terpene828706850120
The following clusters are from record GL377313.1:
Cluster 23Ubia_cyclase803305864609
The following clusters are from record GL377317.1:
Cluster 24T1fas61802118026
The following clusters are from record GL377318.1:
Cluster 25Other108336158197
Cluster 26Ubia_cyclase201348242800
Cluster 27Ubia_cyclase368644411699
The following clusters are from record GL377319.1:
Cluster 28Ubia_cyclase131349171884
Cluster 29Ubia_cyclase188406229428

Cluster 1 - Ubia_cyclase

Gene cluster description

Gene Cluster 1. Type = UbiA_cyclase. Location: 426578 - 467417 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 2 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp) + (val)
SCHCODRAFT_47390
NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: ile
Minowa: leu
consensus: nrp

SCHCODRAFT_47639
NRPSPredictor2 SVM: N/A
Stachelhaus code: val
Minowa: val
consensus: val

Database cross-links

Gene cluster description

Gene Cluster 2. Type = nrps. Location: 1732512 - 1791912 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 3 - T1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(mal)
SCHCODRAFT_64016
PKS signature: mal
Minowa: mal
consensus: mal

Gene cluster description

Gene Cluster 3. Type = t1pks. Location: 3572025 - 3618126 nt. Click on genes for more information.
Show pHMM detection rules used
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 4 - Ubia_cyclase

Gene cluster description

Gene Cluster 4. Type = UbiA_cyclase. Location: 323051 - 364242 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 5 - Other

Gene cluster description

Gene Cluster 5. Type = other. Location: 1647596 - 1693851 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 6 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp-nrp-nrp)
SCHCODRAFT_256202
NRPSPredictor2 SVM: N/A
Stachelhaus code: gly
Minowa: leu
consensus: nrp

NRPSPredictor2 SVM: val,leu,ile,abu,iva
Stachelhaus code: val
Minowa: ala
consensus: nrp

NRPSPredictor2 SVM: pro
Stachelhaus code: gly
Minowa: ala
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 6. Type = nrps. Location: 3160710 - 3219916 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 7 - Terpene

Gene cluster description

Gene Cluster 7. Type = terpene. Location: 4421937 - 4447522 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 8 - Terpene

Gene cluster description

Gene Cluster 8. Type = terpene. Location: 1727331 - 1748555 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 9 - Ubia_cyclase

Gene cluster description

Gene Cluster 9. Type = UbiA_cyclase. Location: 1758021 - 1799025 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 10 - Other

Gene cluster description

Gene Cluster 10. Type = other. Location: 2794664 - 2840439 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 11 - Ubia_cyclase

Gene cluster description

Gene Cluster 11. Type = UbiA_cyclase. Location: 3214179 - 3254741 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 12 - T1fas

Gene cluster description

Gene Cluster 12. Type = t1fas. Location: 200979 - 253860 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 13 - Terpene

Gene cluster description

Gene Cluster 13. Type = terpene. Location: 338184 - 359564 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 14 - Terpene

Gene cluster description

Gene Cluster 14. Type = terpene. Location: 373738 - 395134 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 15 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
SCHCODRAFT_109347
NRPSPredictor2 SVM: glu,gln
Stachelhaus code: orn
Minowa: leu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 15. Type = nrps. Location: 2121579 - 2165578 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 16 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
SCHCODRAFT_109359
NRPSPredictor2 SVM: glu,gln
Stachelhaus code: cha
Minowa: leu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 16. Type = nrps. Location: 2174553 - 2218554 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 17 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(nrp)
SCHCODRAFT_110050
NRPSPredictor2 SVM: ala
Stachelhaus code: ile
Minowa: leu
consensus: nrp

Database cross-links

Gene cluster description

Gene Cluster 17. Type = nrps. Location: 1901332 - 1945352 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Cluster 18 - Ubia_cyclase

Gene cluster description

Gene Cluster 18. Type = UbiA_cyclase. Location: 493901 - 534873 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 19 - Ubia_cyclase

Gene cluster description

Gene Cluster 19. Type = UbiA_cyclase. Location: 1659071 - 1701926 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 20 - Other

Gene cluster description

Gene Cluster 20. Type = other. Location: 489907 - 534359 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 21 - Ubia_cyclase

Gene cluster description

Gene Cluster 21. Type = UbiA_cyclase. Location: 386387 - 427015 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 22 - Terpene

Gene cluster description

Gene Cluster 22. Type = terpene. Location: 828706 - 850120 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or dmat or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 23 - Ubia_cyclase

Gene cluster description

Gene Cluster 23. Type = UbiA_cyclase. Location: 803305 - 864609 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 24 - T1fas

Gene cluster description

Gene Cluster 24. Type = t1fas. Location: 61802 - 118026 nt. Click on genes for more information.
Show pHMM detection rules used
t1fas: (bt1fas or ft1fas)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

No significant ClusterBlast hits found.

Cluster 25 - Other

Gene cluster description

Gene Cluster 25. Type = other. Location: 108336 - 158197 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 26 - Ubia_cyclase

Gene cluster description

Gene Cluster 26. Type = UbiA_cyclase. Location: 201348 - 242800 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 27 - Ubia_cyclase

Gene cluster description

Gene Cluster 27. Type = UbiA_cyclase. Location: 368644 - 411699 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 28 - Ubia_cyclase

Gene cluster description

Gene Cluster 28. Type = UbiA_cyclase. Location: 131349 - 171884 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Cluster 29 - Ubia_cyclase

Gene cluster description

Gene Cluster 29. Type = UbiA_cyclase. Location: 188406 - 229428 nt. Click on genes for more information.
Show pHMM detection rules used
UbiA_cyclase: (UbiA_cyclase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters